Your team may arrange objects in Home pretty much anyway they like. Your team may also put objects in the Launch Area while preparing for the next Launch, also pretty much anyway they like.
1. During inspection, the only objects that need to be in the small/large Inspection Area are the Robot and other equipment that the team brings to the table (this includes the "white" Mission 11 Structure.) Your referee should set up the field with any Mission Models (the objects already at the table) pushed into the Large Inspection Area (unless we learn that your team will use the Large area instead--we're guessing that all teams will prefer to use the Small area.) You do not have to include any of the Mission Models in your team's inspection.
2. Yes, as part of preparing for their first Launch or any re-Launch, the team Technicians can move Equipment or Mission Models into the Launch Area for the Robot the use/move when it is Launched (rule 21). The Technicians can arrange things in Home while the Robot is running, and then move them in the Launch Area after Interrupting the Robot (rules 22, 26, update RG13)
It is fine to deliver Stacks, Upgrades, and the mission 11 Bag 10 Structure all at the same time. As discussed previously, note that most teams will not want to have their M11 Structure on top of a Stack at the end of the match.
Virginia-DC FLL Referee Advisor